Alignment of alleles: Chimpanzee (Pan troglodytes) IGHA2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Exon names are shown between parentheses on the first line.
The Cysteines involved in the IG CH1, CH2 and CH3 intrachain disulfide bridge are shown with a larger letter C in purple. The Cysteines involved in the H-L or H-H interchain disulfide bridge are shown with a larger letter C in black.
STOP-CODON is indicated by an asterisk.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                                    1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                     A   S   P   T   S   P   K   V   F   P   L   S   L   D   S
  X53706  ,IGHA2*01 (CH1)                         (G)CA TCC CCG ACC AGC CCC AAG GTC TTC CCG CTG AGC CTC GAC AGC

  X08040  ,IGHA2*01

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 N   P   Q                   D   G   N   V   V   V   A   C   L   V   Q   G   F
  X53706  ,IGHA2*01 (CH1)       AAC CCC CAA ... ... ... ... GAT GGG AAC GTG GTC GTC GCC TGC CTG GTC CAG GGC TTC

  X08040  ,IGHA2*01

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 F   P   Q       E   P   L   S   V   T   W   S   E   S   G   Q   N   V
  X53706  ,IGHA2*01 (CH1)       TTC CCC CAG ... GAG CCA CTC AGT GTG ACC TGG AGT GAA AGC GGA CAG AAC GTG ... ...

  X08040  ,IGHA2*01

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         T   A   T   N   F   P   P   S   Q   D   A   S   G
  X53706  ,IGHA2*01 (CH1)       ... ... ACC GCC ACA AAC TTC CCA CCC AGC CAG GAT GCC TCC GGG ... ... ... ... ...

  X08040  ,IGHA2*01

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 D   L   Y   T   T   S   S   Q   L   T   L   P   A   T   Q   C           L   A
  X53706  ,IGHA2*01 (CH1)       GAC CTG TAC ACC ACG AGC AGC CAG CTG ACC CTG CCG GCC ACA CAG TGC ... ... CTA GCC

  X08040  ,IGHA2*01

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 G   K   S   V   T   C   H   V   T   H   Y               T   N   P   S   Q   D
  X53706  ,IGHA2*01 (CH1)       GGC AAG TCC GTG ACA TGC CAC GTG ACG CAC TAC ... ... ... ACG AAT CCC AGC CAG GAT

  X08040  ,IGHA2*01                                                      -- ... ... ... --- --- --- --- --- ---


                                119 120 121 122 123 124
                                 V   T   V   P   C   R
  X53706  ,IGHA2*01 (CH1)       GTG ACT GTG CCC TGC CGA G

  X08040  ,IGHA2*01             --- --- --- --- --- --- -



                                  1   2   3   4   5   6
                                 V   P   P   P   P   P
  X53706  ,IGHA2*01 (H) (1)      TT CCC CCA CCT CCC CCA

  X08040  ,IGHA2*01              -- --- --- --- --- ---




                                                            1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                             C   C   H   P   R   L   S   L   H   R   P   A   L
  X53706  ,IGHA2*01 (CH2)                                   TGC TGC CAC CCC CGA CTG TCG CTG CAC CGA CCG GCC CTC

  X08040  ,IGHA2*01                                         --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 E   D   L   L   L           G   S   E   A   N   L   T   C   T   L   T   G   L
  X53706  ,IGHA2*01 (CH2)       GAG GAC CTG CTC TTA ... ... GGT TCA GAA GCG AAC CTC ACG TGC ACA CTG ACC GGC CTG

  X08040  ,IGHA2*01             --

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 R   D   A       S   G   A   T   F   T   W   T   P   P   S   G   K   S
  X53706  ,IGHA2*01 (CH2)       AGA GAT GCC ... TCT GGT GCC ACC TTC ACC TGG ACG CCC CCA AGT GGG AAG AGC ... ...

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         A   V   Q   G   P   P   E   R   D   L   C   G
  X53706  ,IGHA2*01 (CH2)       ... ... GCT GTT CAA GGA CCA CCT GAG CGT GAC CTC TGT GGC ... ... ... ... ... ...

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                     C   Y   S   V   S   S   V   L   P   G   C   A   Q   P   W           N   H
  X53706  ,IGHA2*01 (CH2)       ... TGC TAT AGT GTG TCC AGT GTC CTG CCT GGT TGT GCC CAG CCA TGG ... ... AAC CAT

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 G   E   T   F   T   C   T   A   A   H   P   E           L   K   N   P   L   T
  X53706  ,IGHA2*01 (CH2)       GGG GAG ACC TTC ACC TGC ACT GCT GCC CAC CCC GAG ... ... TTG AAG AAC CCA CTA ACC


                                119 120 121 122 123 124
                                 A   N   I   T   K   S
  X53706  ,IGHA2*01 (CH2)       GCC AAC ATC ACA AAA TCC G




                                                    1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                     G   N   T   F   R   P   E   V   H   L   L   P   P   P   S
  X53706  ,IGHA2*01 (CH3)                            GA AAC ACG TTC CGG CCC GAG GTC CAC CTG CTG CCG CCG CCG TCG

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 E   E   L   A   L           N   E   L   V   T   L   T   C   L   A   R   G   F
  X53706  ,IGHA2*01 (CH3)       GAG GAG CTG GCC CTG ... ... AAT GAG CTG GTG ACA CTG ACG TGC CTG GCA CGC GGC TTC

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 S   P           K   D   V   L   V   R   W   L   Q   G   S   Q   E   L   P   R
  X53706  ,IGHA2*01 (CH3)       AGC CCC ... ... AAG GAC GTG CTG GTT CGC TGG CTG CAG GGG TCA CAG GAG CTG CCC CGC

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                 E       K   Y   L   T   W   A   S   R   Q   E   P   S   Q   G               T
  X53706  ,IGHA2*01 (CH3)       GAG ... AAG TAC CTG ACT TGG GCA TCC CGG CAG GAG CCC AGC CAG GGC ... ... ... ACC

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 T   T   Y   A   V   T   S   I   L   R   V   A   A   E   D   W           K   K
  X53706  ,IGHA2*01 (CH3)       ACC ACC TAC GCT GTA ACC AGC ATA CTG CGC GTG GCA GCT GAG GAC TGG ... ... AAG AAA

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 G   D   T   F   S   C   M   V   G   H   E   A       L   P   L   A   F   T   Q
  X53706  ,IGHA2*01 (CH3)       GGG GAC ACC TTC TCC TGC ATG GTG GGC CAC GAG GCC ... CTG CCG CTG GCC TTC ACA CAG

                                                                        ____________________________________CHS
                                                                                                               
                                119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138
                                 K   T   I   D   R   L   A               G   K   P   T   H   I   N   V   S   V
  X53706  ,IGHA2*01 (CH3)       AAG ACC ATC GAC CGC CTG GCG ... ... ... GGT AAA CCC ACC CAC ATC AAT GTG TCT GTT

                                ________________________________________
                                                                       
                                139 140 141 142 143 144 145 146 147 148
                                 V   M   A   E   V   D   G   T   C   Y   *
  X53706  ,IGHA2*01 (CH3)       GTC ATG GCG GAG GTG GAC GGC ACC TGC TAC


IMGT note:

(1) In the IGHA gene, the hinge (H) and the (CH2) are joined in a single exon.


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 12/11/2002
Author: Nathalie Bosc